TF_ChIP-seq_ENCSR368GJN
TF_ChIP-seq ENCSR368GJN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4" and target="E2F4"]
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| Id: | TF_ChIP-seq/ENCSR368GJN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR368GJN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4" and target="E2F4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E2F4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN507GSQ|/analyses/ENCAN507GSQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF706ZTX|/files/ENCFF706ZTX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 19179993 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF749XCO|/files/ENCFF749XCO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF749XCO|/files/ENCFF749XCO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706ZTX|/files/ENCFF706ZTX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706ZTX|/files/ENCFF706ZTX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR368GJN | float |
TF_ChIP-seq_ENCSR368GJN |
TF_ChIP-seq ENCSR368GJN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4" and target="E2F4"]
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[8.13, 521] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF221TRR.bed.gz | 95.83 KB | e4124f95f0f2e2991bc1ca299933152b |
| ENCFF221TRR.bed.gz.dvc | 99.0 B | 4da26bbf6b32cab1f5a9be8d6debdb4a |
| ENCFF221TRR.tabix.bed.gz | 66.35 KB | 6d875a37fbd669398423ef951f22500d |
| ENCFF221TRR.tabix.bed.gz.dvc | 105.0 B | 3fbefe6de6b1bbc70cd28b6336e14d3e |
| ENCFF221TRR.tabix.bed.gz.tbi | 44.66 KB | a64dc1d8d055becd4f6ccfe2fd018d50 |
| ENCFF221TRR.tabix.bed.gz.tbi.dvc | 109.0 B | bf6e68c76a905bf064cde65bb433ec92 |
| genomic_resource.yaml | 4.7 KB | e55d7232c9698ab4b99cecd0fce633f1 |
| genomic_resource_original.yaml | 4.54 KB | a3dfabbf4c0037c822c34844bede9b5f |
| statistics/ |