TF_ChIP-seq_ENCSR365YCX
TF_ChIP-seq ENCSR365YCX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"]
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| Id: | TF_ChIP-seq/ENCSR365YCX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR365YCX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN327RPM|/analyses/ENCAN327RPM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN327RPM|/analyses/ENCAN327RPM/} has in progress subobject document {ce1b2a6a-df4f-4b21-8833-a3b17d6c1a57|/documents/ce1b2a6a-df4f-4b21-8833-a3b17d6c1a57/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF905IZD|/files/ENCFF905IZD/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF905IZD|/files/ENCFF905IZD/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF027WHI|/files/ENCFF027WHI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF027WHI|/files/ENCFF027WHI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR365YCX | float |
TF_ChIP-seq_ENCSR365YCX |
TF_ChIP-seq ENCSR365YCX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"]
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[10.3, 449] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF926UHP.bed.gz | 110.63 KB | 2aff5d17af9867232ab6aac7b6e229da |
| ENCFF926UHP.bed.gz.dvc | 100.0 B | 7bdfeeb6709fc245f0b40aed33678da7 |
| ENCFF926UHP.tabix.bed.gz | 84.9 KB | 1d107c170198bdbc600bfc4cd0a98ffe |
| ENCFF926UHP.tabix.bed.gz.dvc | 105.0 B | f701857ac0433163a820fd6716f198c0 |
| ENCFF926UHP.tabix.bed.gz.tbi | 43.56 KB | 4c207bd5544dc5558a426b627ee7101e |
| ENCFF926UHP.tabix.bed.gz.tbi.dvc | 109.0 B | b09b1ca3742439e7d5152fb925262c13 |
| genomic_resource.yaml | 4.45 KB | 8d23669ca966088541b7c12fcc10de77 |
| genomic_resource_original.yaml | 4.29 KB | 1570c5849b1b888aebedf487c7336700 |
| statistics/ |