TF_ChIP-seq_ENCSR363XHT
TF_ChIP-seq ENCSR363XHT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4" and target="HES4"]
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| Id: | TF_ChIP-seq/ENCSR363XHT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR363XHT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4" and target="HES4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HES4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN929RWF|/analyses/ENCAN929RWF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF429HKM|/files/ENCFF429HKM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF429HKM|/files/ENCFF429HKM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF024EMN|/files/ENCFF024EMN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF024EMN|/files/ENCFF024EMN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.62. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF714AQQ|/files/ENCFF714AQQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR363XHT | float |
TF_ChIP-seq_ENCSR363XHT |
TF_ChIP-seq ENCSR363XHT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4" and target="HES4"]
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[11.6, 531] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF714AQQ.bed.gz | 237.27 KB | 4f939716b3a1b1080fe183ba92162005 |
| ENCFF714AQQ.bed.gz.dvc | 100.0 B | 1305a91528c2f9cfbfa878358f713e8e |
| ENCFF714AQQ.tabix.bed.gz | 179.63 KB | 1ba41495ff4b1416c5207fc89d4a80b9 |
| ENCFF714AQQ.tabix.bed.gz.dvc | 106.0 B | 975bdb5c3b3261f08d8177f46fb46bd5 |
| ENCFF714AQQ.tabix.bed.gz.tbi | 83.13 KB | e75f19f5f9c2d09274367bf28f065cbb |
| ENCFF714AQQ.tabix.bed.gz.tbi.dvc | 109.0 B | ddb3a2bd2626ede50cbf38dd5ef9c5c2 |
| genomic_resource.yaml | 4.74 KB | cda6ed56bf5a2667bee2b7cc29afad54 |
| genomic_resource_original.yaml | 4.58 KB | 815f606caedd651f69f6e174d75ddbce |
| statistics/ |