TF_ChIP-seq_ENCSR362NWP
TF_ChIP-seq ENCSR362NWP [biosample_summary="Homo sapiens HepG2" and target="ZNF24"]
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| Id: | TF_ChIP-seq/ENCSR362NWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR362NWP [biosamplesummary="Homo sapiens HepG2" and target="ZNF24"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN425CPD|/analyses/ENCAN425CPD/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF125ZRD|/files/ENCFF125ZRD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF125ZRD|/files/ENCFF125ZRD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR362NWP | float |
TF_ChIP-seq_ENCSR362NWP |
TF_ChIP-seq ENCSR362NWP [biosample_summary="Homo sapiens HepG2" and target="ZNF24"]
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[12.8, 5.73e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF443EYO.bed.gz | 143.75 KB | 7f5a9423cdb84a36e4eb1a9e4d82cc96 |
| ENCFF443EYO.bed.gz.dvc | 100.0 B | 59b68c555950951548c6ce5a4a820548 |
| ENCFF443EYO.tabix.bed.gz | 95.52 KB | 315186107140c7e84eb9b956ee08433c |
| ENCFF443EYO.tabix.bed.gz.dvc | 105.0 B | f5efe85905e490b8df9b0a6f1f1561f9 |
| ENCFF443EYO.tabix.bed.gz.tbi | 62.35 KB | b38d149a9d34e581ae438febddd7b2b7 |
| ENCFF443EYO.tabix.bed.gz.tbi.dvc | 109.0 B | 994633c45a962ed9b8ec4414f5fb9975 |
| genomic_resource.yaml | 2.64 KB | 76a14cedfe36e1fee119cc5f8ef40050 |
| genomic_resource_original.yaml | 2.55 KB | 0eff0cca8e756301becbc7adb9bf396e |
| statistics/ |