TF_ChIP-seq_ENCSR360JOC
TF_ChIP-seq ENCSR360JOC [biosample_summary="Homo sapiens MCF-7" and target="CHD1"]
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| Id: | TF_ChIP-seq/ENCSR360JOC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR360JOC [biosamplesummary="Homo sapiens MCF-7" and target="CHD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF730UAD|/files/ENCFF730UAD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN116TEQ|/analyses/ENCAN116TEQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF281AZD|/files/ENCFF281AZD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF281AZD|/files/ENCFF281AZD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR360JOC | float |
TF_ChIP-seq_ENCSR360JOC |
TF_ChIP-seq ENCSR360JOC [biosample_summary="Homo sapiens MCF-7" and target="CHD1"]
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[14.7, 1.74e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730UAD.bed.gz | 213.77 KB | 6a89be8e431255b02116514ee055156a |
| ENCFF730UAD.bed.gz.dvc | 100.0 B | 27a60d44a0481a4f95208aa61b1845ce |
| ENCFF730UAD.tabix.bed.gz | 149.96 KB | aa6f41a9dc7c4f6c040c43e36dcbc94f |
| ENCFF730UAD.tabix.bed.gz.dvc | 106.0 B | d2d534e47a6d67449cedb53f12f6e296 |
| ENCFF730UAD.tabix.bed.gz.tbi | 72.17 KB | a1c0783eae43ad169f889526b7da296c |
| ENCFF730UAD.tabix.bed.gz.tbi.dvc | 109.0 B | 134227d50d65ac63e008c6ba132ec669 |
| genomic_resource.yaml | 2.83 KB | b675f0a1106fa8d542b8d0d479014648 |
| genomic_resource_original.yaml | 2.73 KB | ebff86091a21ac5e5ca807fd9d73cb80 |
| statistics/ |