TF_ChIP-seq_ENCSR360HRA
TF_ChIP-seq ENCSR360HRA [biosample_summary="Homo sapiens K562" and target="KDM1A"]
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| Id: | TF_ChIP-seq/ENCSR360HRA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR360HRA [biosamplesummary="Homo sapiens K562" and target="KDM1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF483BRD|/files/ENCFF483BRD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN214OZV|/analyses/ENCAN214OZV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF042LKP|/files/ENCFF042LKP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF042LKP|/files/ENCFF042LKP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF342FIU|/files/ENCFF342FIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF342FIU|/files/ENCFF342FIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR360HRA | float |
TF_ChIP-seq_ENCSR360HRA |
TF_ChIP-seq ENCSR360HRA [biosample_summary="Homo sapiens K562" and target="KDM1A"]
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[17.6, 6.63e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF483BRD.bed.gz | 609.14 KB | 3424efdcc9ed08c70164c9d973284841 |
| ENCFF483BRD.bed.gz.dvc | 100.0 B | 559ba5cc53ee3327dc57bc2d61fda272 |
| ENCFF483BRD.tabix.bed.gz | 425.65 KB | a282cd5eb5e4bda6c9ab46242313bcc9 |
| ENCFF483BRD.tabix.bed.gz.dvc | 106.0 B | 537bf202f91eac46058c3287714f1c23 |
| ENCFF483BRD.tabix.bed.gz.tbi | 178.17 KB | 25d909b908abe6ce3dffe802400c456c |
| ENCFF483BRD.tabix.bed.gz.tbi.dvc | 110.0 B | 628587a1e918f395d0b78e70aca8a17a |
| genomic_resource.yaml | 4.13 KB | 1cbbb0c03af66a7c835077f1c98660a8 |
| genomic_resource_original.yaml | 4.03 KB | 1a0afaf96492512f61111b49dc64ad3d |
| statistics/ |