TF_ChIP-seq_ENCSR360ECJ
TF_ChIP-seq ENCSR360ECJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"]
×
| Id: | TF_ChIP-seq/ENCSR360ECJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR360ECJ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN152BNL|/analyses/ENCAN152BNL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF350TST|/files/ENCFF350TST/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF628WAR|/files/ENCFF628WAR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF628WAR|/files/ENCFF628WAR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.23. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR360ECJ | float |
TF_ChIP-seq_ENCSR360ECJ |
TF_ChIP-seq ENCSR360ECJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"]
|
|
[9.77, 478] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF672PJF.bed.gz | 87.96 KB | 8fb7dff26cde41f8bb48212b19ae9790 |
| ENCFF672PJF.bed.gz.dvc | 99.0 B | 62cfd37bc06db12cc8d8c72b512dafda |
| ENCFF672PJF.tabix.bed.gz | 62.72 KB | 997b626a749b5ce2678d9188bc161de2 |
| ENCFF672PJF.tabix.bed.gz.dvc | 105.0 B | 7707f64fb75ebf833a92689b0295cf1b |
| ENCFF672PJF.tabix.bed.gz.tbi | 39.63 KB | 84d543c0ebc554c10ae59e7ad034463d |
| ENCFF672PJF.tabix.bed.gz.tbi.dvc | 109.0 B | d554eb061a6f1d5f04ce7be96090f988 |
| genomic_resource.yaml | 3.59 KB | 6721843d55baf292a1447cc1e35c57fa |
| genomic_resource_original.yaml | 3.42 KB | da6b37927c49393f8e8f2a0e1a97b9d3 |
| statistics/ |