type: position_score
table:
  filename: ENCFF417TXD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR359NFW
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR359NFW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2" and target="USF2"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR359NFW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2" and target="USF2"]'
  description: '**status**: archived


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    USF2


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN285BWZ|/analyses/ENCAN285BWZ/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF523PEG|/files/ENCFF523PEG/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 11552770 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    USF2-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Processed alignments file {ENCFF918WMQ|/files/ENCFF918WMQ/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 16175902 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    USF2-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR359NFW
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens USF2
    biosample_summary: Homo sapiens K562 genetically modified (insertion) using CRISPR
      targeting H. sapiens USF2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR359NFW
    date_created: '2016-03-25T20:01:14.797682+00:00'
    date_released: '2016-06-13'
    submitter_comment: ''
    target: USF2
