TF_ChIP-seq_ENCSR359LOD
TF_ChIP-seq ENCSR359LOD [biosample_summary="Homo sapiens PC-3" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR359LOD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR359LOD [biosamplesummary="Homo sapiens PC-3" and target="CTCF"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN144PDL|/analyses/ENCAN144PDL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF387ZDQ|/files/ENCFF387ZDQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15026377 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF572XLQ|/files/ENCFF572XLQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR359LOD | float |
TF_ChIP-seq_ENCSR359LOD |
TF_ChIP-seq ENCSR359LOD [biosample_summary="Homo sapiens PC-3" and target="CTCF"]
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[7.69, 886] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF232FXZ.bed.gz | 1.17 MB | e48ba226dbad90c6a399efe094b2bbf3 |
| ENCFF232FXZ.bed.gz.dvc | 101.0 B | c2c793c3dacc725dc88a32cbdb950616 |
| ENCFF232FXZ.tabix.bed.gz | 820.09 KB | 96063d888c241175e000e63a3c5a6740 |
| ENCFF232FXZ.tabix.bed.gz.dvc | 106.0 B | 81c35c7142a3d690921492b65a4860b6 |
| ENCFF232FXZ.tabix.bed.gz.tbi | 350.72 KB | c1467422d6f620250782abb181c0eee4 |
| ENCFF232FXZ.tabix.bed.gz.tbi.dvc | 110.0 B | ee9fcc68ba5f0c909e9ecfb0dbf61b68 |
| genomic_resource.yaml | 2.85 KB | 8c6407758c191fda442d2b7b6645902c |
| genomic_resource_original.yaml | 2.76 KB | 9d1cf9e9e63f205becb3a9d8fc69dcc2 |
| statistics/ |