TF_ChIP-seq_ENCSR352BJL
TF_ChIP-seq ENCSR352BJL [biosample_summary="Homo sapiens K562" and target="ZNF318"]
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| Id: | TF_ChIP-seq/ENCSR352BJL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR352BJL [biosamplesummary="Homo sapiens K562" and target="ZNF318"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN029JBE|/analyses/ENCAN029JBE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF175TNH|/files/ENCFF175TNH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12694706 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF318-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF720PEL|/files/ENCFF720PEL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17545834 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF318-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF175TNH|/files/ENCFF175TNH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF175TNH|/files/ENCFF175TNH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR352BJL | float |
TF_ChIP-seq_ENCSR352BJL |
TF_ChIP-seq ENCSR352BJL [biosample_summary="Homo sapiens K562" and target="ZNF318"]
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[27.7, 2.2e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF921WMN.bed.gz | 165.12 KB | 20b395a93cc75d57adb1473906fc3ec0 |
| ENCFF921WMN.bed.gz.dvc | 100.0 B | b412d613c97353b8d1f7cda10bfd502b |
| ENCFF921WMN.tabix.bed.gz | 137.69 KB | 73879f8c763853112a5d9ec9247bea67 |
| ENCFF921WMN.tabix.bed.gz.dvc | 106.0 B | 7af05d12c86ad3e74dc4899513e6733a |
| ENCFF921WMN.tabix.bed.gz.tbi | 77.9 KB | 9558533110d35f5cb7ac922d1872877f |
| ENCFF921WMN.tabix.bed.gz.tbi.dvc | 109.0 B | 40d1a13db24293cc84e1092da3d9bc9f |
| genomic_resource.yaml | 3.64 KB | 291dd777142f028486c2434816912d7f |
| genomic_resource_original.yaml | 3.54 KB | 199011d2d031ed06567951f5a55b52b5 |
| statistics/ |