TF_ChIP-seq_ENCSR350XWY
TF_ChIP-seq ENCSR350XWY [biosample_summary="Homo sapiens K562" and target="C11orf30"]
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| Id: | TF_ChIP-seq/ENCSR350XWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR350XWY [biosamplesummary="Homo sapiens K562" and target="C11orf30"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF104MXG|/files/ENCFF104MXG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN700CZX|/analyses/ENCAN700CZX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF904OXK|/files/ENCFF904OXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13301835 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting C11orf30-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF077NYA|/files/ENCFF077NYA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.99. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR350XWY | float |
TF_ChIP-seq_ENCSR350XWY |
TF_ChIP-seq ENCSR350XWY [biosample_summary="Homo sapiens K562" and target="C11orf30"]
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[13, 3.82e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF104MXG.bed.gz | 1.04 MB | deefb2b075a1019cafbcf0117822e8dc |
| ENCFF104MXG.bed.gz.dvc | 101.0 B | 5053781c809d236bc75187f107f5aefc |
| ENCFF104MXG.tabix.bed.gz | 740.98 KB | 2d8773c92daed9c98872e5e9ff62443a |
| ENCFF104MXG.tabix.bed.gz.dvc | 106.0 B | 0b05b17a9b332ed1bf992ba0611149ba |
| ENCFF104MXG.tabix.bed.gz.tbi | 339.55 KB | 18991a7c193e786d409ce7005a21580d |
| ENCFF104MXG.tabix.bed.gz.tbi.dvc | 110.0 B | e218a6254ae8ea47c9224f3ffd811e82 |
| genomic_resource.yaml | 2.67 KB | 6fc36a1613ec2df4e7ed01c5e5115004 |
| genomic_resource_original.yaml | 2.57 KB | c4d8bfff221c5008edbb21119bc0fdad |
| statistics/ |