TF_ChIP-seq_ENCSR350NBQ
TF_ChIP-seq ENCSR350NBQ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR350NBQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR350NBQ [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN535CAO|/analyses/ENCAN535CAO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF952JUT|/files/ENCFF952JUT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR350NBQ | float |
TF_ChIP-seq_ENCSR350NBQ |
TF_ChIP-seq ENCSR350NBQ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="CTCF"]
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[5.35, 457] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF749GUK.bed.gz | 716.95 KB | 52f53307d8d0314c6f86e86cbbdb2069 |
| ENCFF749GUK.bed.gz.dvc | 100.0 B | 5e2010d9b70567c6084105a915926d7b |
| ENCFF749GUK.tabix.bed.gz | 532.13 KB | e2e5cc7da72683e6e140df302bd7e878 |
| ENCFF749GUK.tabix.bed.gz.dvc | 106.0 B | ed2b3cea09c78f28bea758e559987b3b |
| ENCFF749GUK.tabix.bed.gz.tbi | 274.42 KB | f89462233c395fce812fb60b5ec8de5d |
| ENCFF749GUK.tabix.bed.gz.tbi.dvc | 110.0 B | b228a6349b86fc308b592f6c69b268d1 |
| genomic_resource.yaml | 2.14 KB | cdb973d303fa32cc36aef442167ddddc |
| genomic_resource_original.yaml | 2.0 KB | fcf981dae5115230b556e9e6bf8621af |
| statistics/ |