TF_ChIP-seq_ENCSR350LBJ
TF_ChIP-seq ENCSR350LBJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"]
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| Id: | TF_ChIP-seq/ENCSR350LBJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR350LBJ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN593EEF|/analyses/ENCAN593EEF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF179OTB|/files/ENCFF179OTB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF179OTB|/files/ENCFF179OTB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF043MLC|/files/ENCFF043MLC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF043MLC|/files/ENCFF043MLC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.10. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF019XPF|/files/ENCFF019XPF/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 3.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR350LBJ | float |
TF_ChIP-seq_ENCSR350LBJ |
TF_ChIP-seq ENCSR350LBJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7" and target="KAT7"]
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[8.26, 308] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF019XPF.bed.gz | 167.8 KB | 32d461d7cf9322679d1602d92faf8612 |
| ENCFF019XPF.bed.gz.dvc | 100.0 B | 0fde39f972fdde1829f63b0b0de0e902 |
| ENCFF019XPF.tabix.bed.gz | 126.16 KB | 74798c3b153b3a687fd3b88b59d8278c |
| ENCFF019XPF.tabix.bed.gz.dvc | 106.0 B | c6614dca20be579c31619b7203a23269 |
| ENCFF019XPF.tabix.bed.gz.tbi | 64.79 KB | 7d055427973912608cb5a9ba0d1e7060 |
| ENCFF019XPF.tabix.bed.gz.tbi.dvc | 109.0 B | ab033fae40e79eab4ec5d55367105d64 |
| genomic_resource.yaml | 4.74 KB | b37abecd76b2b89de7374367a00a686e |
| genomic_resource_original.yaml | 4.58 KB | d7399591cd3f6246dd0117a7f14192ab |
| statistics/ |