TF_ChIP-seq_ENCSR349FYX
TF_ChIP-seq ENCSR349FYX [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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| Id: | TF_ChIP-seq/ENCSR349FYX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR349FYX [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAX output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN873JWJ|/analyses/ENCAN873JWJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF197IBQ|/files/ENCFF197IBQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF197IBQ|/files/ENCFF197IBQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR349FYX | float |
TF_ChIP-seq_ENCSR349FYX |
TF_ChIP-seq ENCSR349FYX [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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[10.6, 649] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF760NBK.bed.gz | 524.63 KB | 7d628edad5bd477fdf6cf8965200a05d |
| ENCFF760NBK.bed.gz.dvc | 100.0 B | 08a31ab46513e597f10f68cee24a6897 |
| ENCFF760NBK.tabix.bed.gz | 437.48 KB | b324a116ea6a25aae168143dda7d64d1 |
| ENCFF760NBK.tabix.bed.gz.dvc | 106.0 B | f1de89afca42888988d00607757ed053 |
| ENCFF760NBK.tabix.bed.gz.tbi | 160.54 KB | 07c5a2019e0fa50070a11710e4c96a3d |
| ENCFF760NBK.tabix.bed.gz.tbi.dvc | 110.0 B | 10f7cfca107d97aaf2620db950b158a4 |
| genomic_resource.yaml | 2.95 KB | ca2faa6a6ee9ecb2ee311901683efd28 |
| genomic_resource_original.yaml | 2.79 KB | 7a29bdf50031972f84f8cd51591f5f60 |
| statistics/ |