TF_ChIP-seq_ENCSR347PUQ
TF_ChIP-seq ENCSR347PUQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC" and target="ZXDC"]
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| Id: | TF_ChIP-seq/ENCSR347PUQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR347PUQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC" and target="ZXDC"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN972KVH|/analyses/ENCAN972KVH/} has in progress subobject document {3ad6b79a-eb0f-46e6-977c-a1c1a5a830c8|/documents/3ad6b79a-eb0f-46e6-977c-a1c1a5a830c8/} audit_internal_action: Released analysis {ENCAN972KVH|/analyses/ENCAN972KVH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF132DMH|/files/ENCFF132DMH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF132DMH|/files/ENCFF132DMH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955NIH|/files/ENCFF955NIH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955NIH|/files/ENCFF955NIH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR347PUQ | float |
TF_ChIP-seq_ENCSR347PUQ |
TF_ChIP-seq ENCSR347PUQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC" and target="ZXDC"]
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[13.9, 761] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF044XYZ.bed.gz | 174.97 KB | ecff3d23c87ec3a8d087d812957ede98 |
| ENCFF044XYZ.bed.gz.dvc | 100.0 B | 33a700e15619562e7cbdf0cd15d2de01 |
| ENCFF044XYZ.tabix.bed.gz | 130.59 KB | 3089f15d6af791c57012f4cf3c35f734 |
| ENCFF044XYZ.tabix.bed.gz.dvc | 106.0 B | a9fd6fc76e8b0b9029f52c30cee0a61f |
| ENCFF044XYZ.tabix.bed.gz.tbi | 62.73 KB | 409277880c7515a232a16d4bab446639 |
| ENCFF044XYZ.tabix.bed.gz.tbi.dvc | 109.0 B | 115d07bd18980f34f30b50d73021a298 |
| genomic_resource.yaml | 4.43 KB | 557b95aa75e2041ea62559de5a796cfb |
| genomic_resource_original.yaml | 4.27 KB | b8af2371b62135afd40f1b5d40b3757d |
| statistics/ |