| Id: | TF_ChIP-seq/ENCSR347MXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR347MXL [biosamplesummary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN377UHY|/analyses/ENCAN377UHY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF073BJH|/files/ENCFF073BJH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF073BJH|/files/ENCFF073BJH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.53. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR347MXL | float |
TF_ChIP-seq_ENCSR347MXL |
TF_ChIP-seq ENCSR347MXL [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours" and target="CTCF"]
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[8.2, 257] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF213WPO.bed.gz | 816.67 KB | c9de049dab1a2eff9313c0906b0f191a |
| ENCFF213WPO.bed.gz.dvc | 100.0 B | f46dea74425b6be8f3448a568186abfe |
| ENCFF213WPO.tabix.bed.gz | 722.98 KB | 4a1c5866ced89e8aafa9044a5ecd7af3 |
| ENCFF213WPO.tabix.bed.gz.dvc | 106.0 B | 11c8fadc986218c682a107d3de9febbd |
| ENCFF213WPO.tabix.bed.gz.tbi | 232.98 KB | ea321556552e71e3de7f38890bea8c8b |
| ENCFF213WPO.tabix.bed.gz.tbi.dvc | 110.0 B | c859f0cf8950cfc3fe32326eaa431acf |
| genomic_resource.yaml | 3.12 KB | 526c55ddb6617419ec6a647a999c4d4b |
| genomic_resource_original.yaml | 2.92 KB | f69c34f086af954ed9f57f78c4cb749c |
| statistics/ |