TF_ChIP-seq_ENCSR347HAM
TF_ChIP-seq ENCSR347HAM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221" and target="ZNF221"]
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| Id: | TF_ChIP-seq/ENCSR347HAM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR347HAM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221" and target="ZNF221"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN163AUH|/analyses/ENCAN163AUH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF878RXA|/files/ENCFF878RXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF878RXA|/files/ENCFF878RXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF014YCL|/files/ENCFF014YCL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF014YCL|/files/ENCFF014YCL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR347HAM | float |
TF_ChIP-seq_ENCSR347HAM |
TF_ChIP-seq ENCSR347HAM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221" and target="ZNF221"]
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[15.2, 683] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF120BVS.bed.gz | 427.18 KB | 4432e15a8817da1eac411bc228ea10ed |
| ENCFF120BVS.bed.gz.dvc | 100.0 B | 1257e4f425d3d92ecea4612846dd5e65 |
| ENCFF120BVS.tabix.bed.gz | 346.34 KB | 01c651588c3f4bd72399a066b79752e9 |
| ENCFF120BVS.tabix.bed.gz.dvc | 106.0 B | 28b807f327bfdeddf87abf8cf661924a |
| ENCFF120BVS.tabix.bed.gz.tbi | 116.75 KB | 6b3245e3b705f2331b1779442932f750 |
| ENCFF120BVS.tabix.bed.gz.tbi.dvc | 110.0 B | 517fd66cb7512fc4cd792e773c779816 |
| genomic_resource.yaml | 4.24 KB | 42c2be0cfd50f42f792bbdb430883e0e |
| genomic_resource_original.yaml | 4.07 KB | ef4a2d82e31ab5dfd4b249c95008a7ed |
| statistics/ |