TF_ChIP-seq_ENCSR346BOD
TF_ChIP-seq ENCSR346BOD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2" and target="TCF7L2"]
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| Id: | TF_ChIP-seq/ENCSR346BOD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR346BOD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2" and target="TCF7L2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN824AMU|/analyses/ENCAN824AMU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN824AMU|/analyses/ENCAN824AMU/} has in progress subobject document {1c07ed04-88cc-4e7e-aa86-2ea4a78433c7|/documents/1c07ed04-88cc-4e7e-aa86-2ea4a78433c7/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF527ZME|/files/ENCFF527ZME/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF527ZME|/files/ENCFF527ZME/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF637HTX|/files/ENCFF637HTX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF637HTX|/files/ENCFF637HTX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR346BOD | float |
TF_ChIP-seq_ENCSR346BOD |
TF_ChIP-seq ENCSR346BOD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2" and target="TCF7L2"]
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[11.6, 892] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF726SWQ.bed.gz | 619.92 KB | 1e1730cc71279765a7c78d95493629b1 |
| ENCFF726SWQ.bed.gz.dvc | 100.0 B | 99ec4913eee9245a09b0b3b3bc649009 |
| ENCFF726SWQ.tabix.bed.gz | 476.64 KB | e52526048bced5df952368694fe0bdcb |
| ENCFF726SWQ.tabix.bed.gz.dvc | 106.0 B | 2cc705dfc5d9419bb751c97c6186b8a4 |
| ENCFF726SWQ.tabix.bed.gz.tbi | 187.14 KB | ff094bfd8db17a79beb6b0bb9f73191c |
| ENCFF726SWQ.tabix.bed.gz.tbi.dvc | 110.0 B | a28b14e4f29f0a9d06208dd4aab2f614 |
| genomic_resource.yaml | 4.45 KB | c376ff57db8704403a55b5375af4f64c |
| genomic_resource_original.yaml | 4.29 KB | 808493c7978644ad10f19ea19e5b686d |
| statistics/ |