TF_ChIP-seq_ENCSR345YWJ
TF_ChIP-seq ENCSR345YWJ [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="ZBTB33"]
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| Id: | TF_ChIP-seq/ENCSR345YWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR345YWJ [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="ZBTB33"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN356IOP|/analyses/ENCAN356IOP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF308VUQ|/files/ENCFF308VUQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18010062 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF458VTX|/files/ENCFF458VTX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 2.30. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR345YWJ | float |
TF_ChIP-seq_ENCSR345YWJ |
TF_ChIP-seq ENCSR345YWJ [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="ZBTB33"]
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[6.56, 1.08e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF458VTX.bed.gz | 88.98 KB | ab0e2940eb2072032426d7a01c165f6b |
| ENCFF458VTX.bed.gz.dvc | 99.0 B | 3fe6d21e330ff6032d5b20d4139275ac |
| ENCFF458VTX.tabix.bed.gz | 65.78 KB | 8079e7f7b2f62c6c8b3eb500d1c00610 |
| ENCFF458VTX.tabix.bed.gz.dvc | 105.0 B | 585ae23c9108eed473fefa8b0645a4e6 |
| ENCFF458VTX.tabix.bed.gz.tbi | 42.77 KB | 690fb93d95884447c3398376807ad3af |
| ENCFF458VTX.tabix.bed.gz.tbi.dvc | 109.0 B | 50984a07e83acc825560fa0b0bf2268d |
| genomic_resource.yaml | 2.47 KB | 2a8e7f3af27f35c01b20d5bf98a6dc76 |
| genomic_resource_original.yaml | 2.35 KB | 1e25c9e2ad865f32ddefc1c7ddd30206 |
| statistics/ |