TF_ChIP-seq_ENCSR343IFJ
TF_ChIP-seq ENCSR343IFJ [biosample_summary="Homo sapiens K562" and target="CC2D1A"]
×
| Id: | TF_ChIP-seq/ENCSR343IFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR343IFJ [biosamplesummary="Homo sapiens K562" and target="CC2D1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN403GDB|/analyses/ENCAN403GDB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF180TUM|/files/ENCFF180TUM/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138PZX|/files/ENCFF138PZX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138PZX|/files/ENCFF138PZX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF039QUZ|/files/ENCFF039QUZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF039QUZ|/files/ENCFF039QUZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR343IFJ | float |
TF_ChIP-seq_ENCSR343IFJ |
TF_ChIP-seq ENCSR343IFJ [biosample_summary="Homo sapiens K562" and target="CC2D1A"]
|
|
[13.2, 5.33e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF180TUM.bed.gz | 463.13 KB | c6a01e42d9542587c329c4ba60a2e61a |
| ENCFF180TUM.bed.gz.dvc | 100.0 B | 44ebd1c748f4148449730189bda11431 |
| ENCFF180TUM.tabix.bed.gz | 336.93 KB | 26bf6d5e73c616566f7b11b9dc9a98de |
| ENCFF180TUM.tabix.bed.gz.dvc | 106.0 B | ee5227af17f68c6f3a3e586684e84ec0 |
| ENCFF180TUM.tabix.bed.gz.tbi | 155.43 KB | ca36c68bc81810ceeb274ab9fd7a8335 |
| ENCFF180TUM.tabix.bed.gz.tbi.dvc | 110.0 B | db75303edd90563357ba1b53577d2f0e |
| genomic_resource.yaml | 4.13 KB | 085c723047382cbd359e74b5ac951828 |
| genomic_resource_original.yaml | 4.03 KB | 84f70524bd0f5cb69defec2a4aff9169 |
| statistics/ |