TF_ChIP-seq_ENCSR343ELW
TF_ChIP-seq ENCSR343ELW [biosample_summary="Homo sapiens K562" and target="LEF1"]
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| Id: | TF_ChIP-seq/ENCSR343ELW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR343ELW [biosamplesummary="Homo sapiens K562" and target="LEF1"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN121FGQ|/analyses/ENCAN121FGQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF928QMZ|/files/ENCFF928QMZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF928QMZ|/files/ENCFF928QMZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.31. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF550WAC|/files/ENCFF550WAC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF550WAC|/files/ENCFF550WAC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR343ELW | float |
TF_ChIP-seq_ENCSR343ELW |
TF_ChIP-seq ENCSR343ELW [biosample_summary="Homo sapiens K562" and target="LEF1"]
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[38.1, 2.18e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF659WAF.bed.gz | 330.24 KB | 17a9dcb21ebd4ab5fd04becd0fe896f9 |
| ENCFF659WAF.bed.gz.dvc | 100.0 B | 85b3efcf23710b5cbd2fcb37a6fa63f8 |
| ENCFF659WAF.tabix.bed.gz | 277.0 KB | 910dd3a5fc19457d754d4b8487ad9b40 |
| ENCFF659WAF.tabix.bed.gz.dvc | 106.0 B | ab605da741c037e0a88999e083f8c24d |
| ENCFF659WAF.tabix.bed.gz.tbi | 129.53 KB | f013e514c340fc876d660d863e224ee2 |
| ENCFF659WAF.tabix.bed.gz.tbi.dvc | 110.0 B | db3613da39fb69a483ea918f10c76d52 |
| genomic_resource.yaml | 3.93 KB | e98c29b00de4d72947c8ce2094b8d50b |
| genomic_resource_original.yaml | 3.84 KB | cd7ce5741054a10b9ccb18549e96953f |
| statistics/ |