TF_ChIP-seq_ENCSR338UQU
TF_ChIP-seq ENCSR338UQU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"]
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| Id: | TF_ChIP-seq/ENCSR338UQU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR338UQU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN607WTO|/analyses/ENCAN607WTO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF132PQI|/files/ENCFF132PQI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF132PQI|/files/ENCFF132PQI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF910AIF|/files/ENCFF910AIF/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF910AIF|/files/ENCFF910AIF/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR338UQU | float |
TF_ChIP-seq_ENCSR338UQU |
TF_ChIP-seq ENCSR338UQU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6" and target="STAT6"]
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[10.1, 202] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF598VGY.bed.gz | 107.84 KB | 57cc5728035c922fdc6f3b930c1675f3 |
| ENCFF598VGY.bed.gz.dvc | 100.0 B | 454c9dbda8718a9d79363eed891367ff |
| ENCFF598VGY.tabix.bed.gz | 78.55 KB | 1ab2d12815d3f2f12715b9ee3aad530a |
| ENCFF598VGY.tabix.bed.gz.dvc | 105.0 B | 3d94b45abeed7f86346af524926f4592 |
| ENCFF598VGY.tabix.bed.gz.tbi | 39.67 KB | bc1a1083ae6c1106bd5a232a3ea7f0e0 |
| ENCFF598VGY.tabix.bed.gz.tbi.dvc | 109.0 B | 86ccd0823b4f29559689e3a7c78e92b1 |
| genomic_resource.yaml | 4.23 KB | 0e3d2bfc1edf07311c0bf267974fe920 |
| genomic_resource_original.yaml | 4.07 KB | d6c1c430ce2fe990abb78e8709f37789 |
| statistics/ |