TF_ChIP-seq_ENCSR338MMB
TF_ChIP-seq ENCSR338MMB [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="NR2F2"]
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| Id: | TF_ChIP-seq/ENCSR338MMB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR338MMB [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="NR2F2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN447ZAS|/analyses/ENCAN447ZAS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF379TVQ|/files/ENCFF379TVQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF233KNQ|/files/ENCFF233KNQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16213330 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR2F2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF490SKM|/files/ENCFF490SKM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF490SKM|/files/ENCFF490SKM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR338MMB | float |
TF_ChIP-seq_ENCSR338MMB |
TF_ChIP-seq ENCSR338MMB [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="NR2F2"]
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[6.61, 603] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF379TVQ.bed.gz | 492.35 KB | 84257dd5ce7c1cfe6c380d53b1990ecc |
| ENCFF379TVQ.bed.gz.dvc | 100.0 B | f4f159746ac0bbe86f26d114ce7b539e |
| ENCFF379TVQ.tabix.bed.gz | 366.55 KB | d2a015d40fc0d5e524d4b805a1d14f98 |
| ENCFF379TVQ.tabix.bed.gz.dvc | 106.0 B | 18809473ec48712171d629d1cb7977ce |
| ENCFF379TVQ.tabix.bed.gz.tbi | 168.05 KB | e05a933880d6f14feae4b2fc2fa7c46a |
| ENCFF379TVQ.tabix.bed.gz.tbi.dvc | 110.0 B | 2e8811424fde2c081f2acb0dc049cac8 |
| genomic_resource.yaml | 3.6 KB | b249259ce248f4f69aa44501ed007292 |
| genomic_resource_original.yaml | 3.44 KB | ea8beb03264d02e67656d0829e4e4b96 |
| statistics/ |