TF_ChIP-seq_ENCSR338DUC
TF_ChIP-seq ENCSR338DUC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR338DUC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR338DUC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN874TNQ|/analyses/ENCAN874TNQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN874TNQ|/analyses/ENCAN874TNQ/} has in progress subobject document {568bfc7e-1c1c-480d-ae51-d7c4f2b58e06|/documents/568bfc7e-1c1c-480d-ae51-d7c4f2b58e06/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF924QOB|/files/ENCFF924QOB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF924QOB|/files/ENCFF924QOB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.74. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF438ULA|/files/ENCFF438ULA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF438ULA|/files/ENCFF438ULA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR338DUC | float |
TF_ChIP-seq_ENCSR338DUC |
TF_ChIP-seq ENCSR338DUC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"]
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[12, 2.01e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF617LWF.bed.gz | 654.56 KB | 271bf88e7ad8ad0d480331e566f006c6 |
| ENCFF617LWF.bed.gz.dvc | 100.0 B | 2fc1f46952c5cea930d30d5af084dca7 |
| ENCFF617LWF.tabix.bed.gz | 464.13 KB | 2b9966869e01a23713eb0794d8f37d84 |
| ENCFF617LWF.tabix.bed.gz.dvc | 106.0 B | 343794cb01b34938192ed1bd32473ceb |
| ENCFF617LWF.tabix.bed.gz.tbi | 216.12 KB | d23f6c3db3f45ce56566ed65b623553a |
| ENCFF617LWF.tabix.bed.gz.tbi.dvc | 110.0 B | b89c290e3615c519e2b64371c147c751 |
| genomic_resource.yaml | 4.44 KB | ebf5869fcafd298542ca8be743539db3 |
| genomic_resource_original.yaml | 4.28 KB | fd0db78bbe3c1ebe79d3ac27ef39974f |
| statistics/ |