TF_ChIP-seq_ENCSR336PTS
TF_ChIP-seq ENCSR336PTS [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR336PTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR336PTS [biosamplesummary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (65 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN136NUS|/analyses/ENCAN136NUS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF317HVE|/files/ENCFF317HVE/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF317HVE|/files/ENCFF317HVE/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR336PTS | float |
TF_ChIP-seq_ENCSR336PTS |
TF_ChIP-seq ENCSR336PTS [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (65 years)" and target="CTCF"]
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[6.46, 400] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF406EOR.bed.gz | 552.92 KB | 1ec204676c49b2a3d63956ca42ebe126 |
| ENCFF406EOR.bed.gz.dvc | 100.0 B | aca91f2e486ef038d4bacf26318efb8c |
| ENCFF406EOR.tabix.bed.gz | 424.42 KB | 4445157a5e4db9f8dcda5684955865fa |
| ENCFF406EOR.tabix.bed.gz.dvc | 106.0 B | 87126a97d40d7d73e0d4d42734b89afd |
| ENCFF406EOR.tabix.bed.gz.tbi | 220.53 KB | 4bb55637b6599c09e6334cb666071d80 |
| ENCFF406EOR.tabix.bed.gz.tbi.dvc | 110.0 B | 836198c34ed55422f325baee33321ee1 |
| genomic_resource.yaml | 3.29 KB | db9c28a9924380aa9eaa41b8e05f5d0c |
| genomic_resource_original.yaml | 3.16 KB | b2af6a8634d2bf6dff2858e6ad9f6216 |
| statistics/ |