TF_ChIP-seq_ENCSR336DXE
TF_ChIP-seq ENCSR336DXE [biosample_summary="Homo sapiens K562" and target="SKIL"]
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| Id: | TF_ChIP-seq/ENCSR336DXE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR336DXE [biosamplesummary="Homo sapiens K562" and target="SKIL"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN805FKW|/analyses/ENCAN805FKW/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF010OCL|/files/ENCFF010OCL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF010OCL|/files/ENCFF010OCL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR336DXE | float |
TF_ChIP-seq_ENCSR336DXE |
TF_ChIP-seq ENCSR336DXE [biosample_summary="Homo sapiens K562" and target="SKIL"]
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[14.2, 1.89e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF481WGW.bed.gz | 438.82 KB | 9d5b80adbb13a11fc2daf31c2c04992c |
| ENCFF481WGW.bed.gz.dvc | 100.0 B | 433bdeb203759202482002405e048157 |
| ENCFF481WGW.tabix.bed.gz | 335.81 KB | 2850bc8bb9011b1e9d75201351eafe76 |
| ENCFF481WGW.tabix.bed.gz.dvc | 106.0 B | c141b8f9e21cc27bc19acb01e562ad4d |
| ENCFF481WGW.tabix.bed.gz.tbi | 132.3 KB | e9d0ded71834efd6d9234a3e72476618 |
| ENCFF481WGW.tabix.bed.gz.tbi.dvc | 110.0 B | 11f3294b320f4c028f174164fc0ef2b6 |
| genomic_resource.yaml | 2.64 KB | be7211779ba15d3e3c7040574dcd827b |
| genomic_resource_original.yaml | 2.54 KB | ab764e9837228b0bdc9758ec9c7f262d |
| statistics/ |