TF_ChIP-seq_ENCSR335SUD
TF_ChIP-seq ENCSR335SUD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436" and target="ZNF436"]
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| Id: | TF_ChIP-seq/ENCSR335SUD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR335SUD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436" and target="ZNF436"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN146HVW|/analyses/ENCAN146HVW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF469BFJ|/files/ENCFF469BFJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF469BFJ|/files/ENCFF469BFJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.57. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF533RWZ|/files/ENCFF533RWZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF533RWZ|/files/ENCFF533RWZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR335SUD | float |
TF_ChIP-seq_ENCSR335SUD |
TF_ChIP-seq ENCSR335SUD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF436" and target="ZNF436"]
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[16.6, 1.61e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF318ZUN.bed.gz | 48.75 KB | 50e546ab5ebe87fc2e8c7b1ea186414d |
| ENCFF318ZUN.bed.gz.dvc | 99.0 B | 141d124830193284a6882e585d8b21d4 |
| ENCFF318ZUN.tabix.bed.gz | 31.21 KB | 8bf16fd02df7fd298c8da8527bf93e0f |
| ENCFF318ZUN.tabix.bed.gz.dvc | 105.0 B | 9d80edd97020c5c81d895e3acc36ca7e |
| ENCFF318ZUN.tabix.bed.gz.tbi | 25.45 KB | a37984eb30b14e7df0a089cfd536497d |
| ENCFF318ZUN.tabix.bed.gz.tbi.dvc | 109.0 B | ba2a700c811bc5be0828d57c4f4b4291 |
| genomic_resource.yaml | 4.24 KB | 1f39dfaf1e7fb52188cc6496c9ed3734 |
| genomic_resource_original.yaml | 4.07 KB | 2c03bb1d048df1e116906e4f70802424 |
| statistics/ |