TF_ChIP-seq_ENCSR332EYT
TF_ChIP-seq ENCSR332EYT [biosample_summary="Homo sapiens GM12878" and target="STAT1"]
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| Id: | TF_ChIP-seq/ENCSR332EYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR332EYT [biosamplesummary="Homo sapiens GM12878" and target="STAT1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN488SYR|/analyses/ENCAN488SYR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN488SYR|/analyses/ENCAN488SYR/} has in progress subobject document {53ae2959-959b-4953-b84a-e83f2d51684b|/documents/53ae2959-959b-4953-b84a-e83f2d51684b/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF526SHJ|/files/ENCFF526SHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF526SHJ|/files/ENCFF526SHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR332EYT | float |
TF_ChIP-seq_ENCSR332EYT |
TF_ChIP-seq ENCSR332EYT [biosample_summary="Homo sapiens GM12878" and target="STAT1"]
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[12, 730] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF973ACG.bed.gz | 103.64 KB | 4e4f15c238139508d07788a5cea7f0d0 |
| ENCFF973ACG.bed.gz.dvc | 100.0 B | de0416c0cc4d9597ad0cd3d1c0e59c59 |
| ENCFF973ACG.tabix.bed.gz | 81.09 KB | e8bf0445b63e9bba79f00113923c27e7 |
| ENCFF973ACG.tabix.bed.gz.dvc | 105.0 B | f1fd2cda537e9d628ff20ead1604e2cd |
| ENCFF973ACG.tabix.bed.gz.tbi | 51.4 KB | 04e4549f5194e66f233531643f89e1db |
| ENCFF973ACG.tabix.bed.gz.tbi.dvc | 109.0 B | fcbb09a7e9e21a2604886174ed3c2b40 |
| genomic_resource.yaml | 2.89 KB | dfc8e66c922c9b39a4d811bdc4785c2c |
| genomic_resource_original.yaml | 2.79 KB | 554b533623a39be84b4e93640e28b5e4 |
| statistics/ |