TF_ChIP-seq_ENCSR331HPA
TF_ChIP-seq ENCSR331HPA [biosample_summary="Homo sapiens GM12878" and target="GABPA"]
×
| Id: | TF_ChIP-seq/ENCSR331HPA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR331HPA [biosamplesummary="Homo sapiens GM12878" and target="GABPA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF946ACA|/files/ENCFF946ACA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN063IEA|/analyses/ENCAN063IEA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF988HVR|/files/ENCFF988HVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11398010 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF178WGW|/files/ENCFF178WGW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19213578 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF988HVR|/files/ENCFF988HVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF988HVR|/files/ENCFF988HVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF178WGW|/files/ENCFF178WGW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF178WGW|/files/ENCFF178WGW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.60. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR331HPA | float |
TF_ChIP-seq_ENCSR331HPA |
TF_ChIP-seq ENCSR331HPA [biosample_summary="Homo sapiens GM12878" and target="GABPA"]
|
|
[4.47, 768] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF946ACA.bed.gz | 149.52 KB | 3eb48d3f5e84af61257eedd43cb78961 |
| ENCFF946ACA.bed.gz.dvc | 100.0 B | ac28604188c5748828bf68a0186bf58b |
| ENCFF946ACA.tabix.bed.gz | 107.49 KB | 99334e2f9d1f118cad1744de3d1440a4 |
| ENCFF946ACA.tabix.bed.gz.dvc | 106.0 B | 5b482112a6acd6616c73ed21a974dc50 |
| ENCFF946ACA.tabix.bed.gz.tbi | 69.14 KB | acf0d900925b3684dad26e1d89e01e63 |
| ENCFF946ACA.tabix.bed.gz.tbi.dvc | 109.0 B | 579b4e5c885be6d497ad5fb3d7f96d89 |
| genomic_resource.yaml | 5.13 KB | f66b54565efb42baa1526e88c583027d |
| genomic_resource_original.yaml | 5.03 KB | 1059a8def253927b21b478d6494dfd3a |
| statistics/ |