TF_ChIP-seq_ENCSR331GDC
TF_ChIP-seq ENCSR331GDC [biosample_summary="Homo sapiens K562" and target="ZBTB11"]
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| Id: | TF_ChIP-seq/ENCSR331GDC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR331GDC [biosamplesummary="Homo sapiens K562" and target="ZBTB11"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF913HCQ|/files/ENCFF913HCQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN605CZT|/analyses/ENCAN605CZT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF290MEZ|/files/ENCFF290MEZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14973693 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB11-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF290MEZ|/files/ENCFF290MEZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF290MEZ|/files/ENCFF290MEZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR331GDC | float |
TF_ChIP-seq_ENCSR331GDC |
TF_ChIP-seq ENCSR331GDC [biosample_summary="Homo sapiens K562" and target="ZBTB11"]
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[5.13, 909] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF913HCQ.bed.gz | 129.54 KB | b70784948dfa6357fa0dc16a2d1d4dc2 |
| ENCFF913HCQ.bed.gz.dvc | 100.0 B | e5c3f1ae7492a2c7863aded482a9acb3 |
| ENCFF913HCQ.tabix.bed.gz | 96.57 KB | 8230b679c53684c086962ab48ad2e3cc |
| ENCFF913HCQ.tabix.bed.gz.dvc | 105.0 B | eb260861bb9eda332c5a02899831ea48 |
| ENCFF913HCQ.tabix.bed.gz.tbi | 61.47 KB | 87c4bef74c33bb9201a3abeff839f23b |
| ENCFF913HCQ.tabix.bed.gz.tbi.dvc | 109.0 B | e72a468b5b27da4a9ff60b001c3e7e96 |
| genomic_resource.yaml | 3.33 KB | 7b1d22a58f9d942397ec05cf9325e495 |
| genomic_resource_original.yaml | 3.23 KB | d639cabedf7eba7096a04bbfdbcd57c6 |
| statistics/ |