TF_ChIP-seq_ENCSR323ZAP
TF_ChIP-seq ENCSR323ZAP [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR323ZAP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR323ZAP [biosamplesummary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN986RQJ|/analyses/ENCAN986RQJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF548QMG|/files/ENCFF548QMG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF548QMG|/files/ENCFF548QMG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.57. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR323ZAP | float |
TF_ChIP-seq_ENCSR323ZAP |
TF_ChIP-seq ENCSR323ZAP [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="CTCF"]
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[6.68, 469] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF564KJT.bed.gz | 751.78 KB | 7ffe3f05a1e42abe0a18d41275784efd |
| ENCFF564KJT.bed.gz.dvc | 100.0 B | 24134f58c77f81a33c23be951e28e4e3 |
| ENCFF564KJT.tabix.bed.gz | 547.82 KB | dc904f94db4103bf7c8bcbcfebc929c5 |
| ENCFF564KJT.tabix.bed.gz.dvc | 106.0 B | 3fdac34f202240e79a566f6e3d1f833d |
| ENCFF564KJT.tabix.bed.gz.tbi | 272.01 KB | 59c777e9833b8d61263fb0934699498e |
| ENCFF564KJT.tabix.bed.gz.tbi.dvc | 110.0 B | bc5a33cfd5d4985dae94ee77b841a257 |
| genomic_resource.yaml | 2.78 KB | 66f8f38564663fa72c4f2838a01369a0 |
| genomic_resource_original.yaml | 2.64 KB | bc4ac825c98b23c3ec828aa0383e48a0 |
| statistics/ |