TF_ChIP-seq_ENCSR318LVG
TF_ChIP-seq ENCSR318LVG [biosample_summary="Homo sapiens MCF-7" and target="ZBTB40"]
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| Id: | TF_ChIP-seq/ENCSR318LVG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR318LVG [biosamplesummary="Homo sapiens MCF-7" and target="ZBTB40"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN675ZNT|/analyses/ENCAN675ZNT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF712AJA|/files/ENCFF712AJA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF712AJA|/files/ENCFF712AJA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF020EIS|/files/ENCFF020EIS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF020EIS|/files/ENCFF020EIS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR318LVG | float |
TF_ChIP-seq_ENCSR318LVG |
TF_ChIP-seq ENCSR318LVG [biosample_summary="Homo sapiens MCF-7" and target="ZBTB40"]
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[17.3, 4.24e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF397XTF.bed.gz | 269.42 KB | a71767d139b97728bef6593298a3d875 |
| ENCFF397XTF.bed.gz.dvc | 100.0 B | c2d14747132d39653390d418011cd0be |
| ENCFF397XTF.tabix.bed.gz | 189.12 KB | 2889866daaeb952a29eb2529a2c44dc6 |
| ENCFF397XTF.tabix.bed.gz.dvc | 106.0 B | 6895a2539d483613a3b31c5125e964c6 |
| ENCFF397XTF.tabix.bed.gz.tbi | 115.14 KB | 74860c9370be3f1c4a587ecef5efd324 |
| ENCFF397XTF.tabix.bed.gz.tbi.dvc | 110.0 B | 0bfe84dbb03d7f5f787960fc4ebef438 |
| genomic_resource.yaml | 3.94 KB | 5f9d3f727d499fa28ffc0294b3ddf117 |
| genomic_resource_original.yaml | 3.85 KB | b699aa0847afcf4b643996253c7e6341 |
| statistics/ |