TF_ChIP-seq_ENCSR315VYZ
TF_ChIP-seq ENCSR315VYZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A" and target="PHF21A"]
×
| Id: | TF_ChIP-seq/ENCSR315VYZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR315VYZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A" and target="PHF21A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN678AEZ|/analyses/ENCAN678AEZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN678AEZ|/analyses/ENCAN678AEZ/} has in progress subobject document {ffc41429-79c5-4d93-a15c-46070d6088ab|/documents/ffc41429-79c5-4d93-a15c-46070d6088ab/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF784ECI|/files/ENCFF784ECI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF784ECI|/files/ENCFF784ECI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.00. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF736QWK|/files/ENCFF736QWK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF736QWK|/files/ENCFF736QWK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.82. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR315VYZ | float |
TF_ChIP-seq_ENCSR315VYZ |
TF_ChIP-seq ENCSR315VYZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A" and target="PHF21A"]
|
|
[12.1, 719] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF682RGD.bed.gz | 659.38 KB | 70db645ad02e7f489fbc2bb25bf3ab3d |
| ENCFF682RGD.bed.gz.dvc | 100.0 B | 51a645d45ba0fa87daf0b7a438b2357e |
| ENCFF682RGD.tabix.bed.gz | 548.38 KB | e6677a64c44445fe96c7334c86b4583c |
| ENCFF682RGD.tabix.bed.gz.dvc | 106.0 B | a0996df99ed63da292718e4891e9740d |
| ENCFF682RGD.tabix.bed.gz.tbi | 163.01 KB | e78aefa24255b5bfc1ea521e09660a33 |
| ENCFF682RGD.tabix.bed.gz.tbi.dvc | 110.0 B | e28dc9b039694bd797049720731d178c |
| genomic_resource.yaml | 4.45 KB | dd33dfcfa14296461e9d87b7ef6e5eb0 |
| genomic_resource_original.yaml | 4.29 KB | 26c440a024f9150ee695c53dc0599466 |
| statistics/ |