TF_ChIP-seq_ENCSR315NAC
TF_ChIP-seq ENCSR315NAC [biosample_summary="Homo sapiens LNCAP" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR315NAC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR315NAC [biosamplesummary="Homo sapiens LNCAP" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN942YBQ|/analyses/ENCAN942YBQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN942YBQ|/analyses/ENCAN942YBQ/} has in progress subobject document {4190a8a0-5c45-4e19-9da2-8bdf2963fe34|/documents/4190a8a0-5c45-4e19-9da2-8bdf2963fe34/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955PPJ|/files/ENCFF955PPJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955PPJ|/files/ENCFF955PPJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.44. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF780DRG|/files/ENCFF780DRG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF780DRG|/files/ENCFF780DRG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR315NAC | float |
TF_ChIP-seq_ENCSR315NAC |
TF_ChIP-seq ENCSR315NAC [biosample_summary="Homo sapiens LNCAP" and target="CTCF"]
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[21.3, 1.64e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF275GDH.bed.gz | 924.32 KB | 37389f2e088a08a5cf5a3a4432566ed3 |
| ENCFF275GDH.bed.gz.dvc | 100.0 B | 7f2278235bf0c82a03ebf1f05bbde8b5 |
| ENCFF275GDH.tabix.bed.gz | 597.65 KB | 704b388dbacfa46f17ff1f5f938f495b |
| ENCFF275GDH.tabix.bed.gz.dvc | 106.0 B | f8c7fb7a53dc7b1c009b2d07ecc9e17f |
| ENCFF275GDH.tabix.bed.gz.tbi | 282.14 KB | 805484182a0e84e9892d7d88cc2123a3 |
| ENCFF275GDH.tabix.bed.gz.tbi.dvc | 110.0 B | 0935602dbb37f390089d174e4111a38a |
| genomic_resource.yaml | 4.42 KB | 33fb9f66502f48ed01062875d8968418 |
| genomic_resource_original.yaml | 4.33 KB | 249acb5717b04738cb2a017d9a8346c8 |
| statistics/ |