TF_ChIP-seq_ENCSR315JJE
TF_ChIP-seq ENCSR315JJE [biosample_summary="Homo sapiens HepG2" and target="HNRNPL"]
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| Id: | TF_ChIP-seq/ENCSR315JJE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR315JJE [biosamplesummary="Homo sapiens HepG2" and target="HNRNPL"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN132VOT|/analyses/ENCAN132VOT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF081JMB|/files/ENCFF081JMB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11602271 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPL-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF766UVZ|/files/ENCFF766UVZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10050429 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPL-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF081JMB|/files/ENCFF081JMB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF081JMB|/files/ENCFF081JMB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.66. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF766UVZ|/files/ENCFF766UVZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF766UVZ|/files/ENCFF766UVZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR315JJE | float |
TF_ChIP-seq_ENCSR315JJE |
TF_ChIP-seq ENCSR315JJE [biosample_summary="Homo sapiens HepG2" and target="HNRNPL"]
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[3.88, 649] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233MID.bed.gz | 395.12 KB | 1000e5ae167a7e197f2dbedbfc166b4b |
| ENCFF233MID.bed.gz.dvc | 100.0 B | 78ac4d42ec278e33515043224b75ec47 |
| ENCFF233MID.tabix.bed.gz | 326.86 KB | 21c9c823297141e6054388e0b4f4b257 |
| ENCFF233MID.tabix.bed.gz.dvc | 106.0 B | 013217686c742f249070c9e278828b7b |
| ENCFF233MID.tabix.bed.gz.tbi | 107.03 KB | dd9d994ef39e03af99f0e2d875f47bec |
| ENCFF233MID.tabix.bed.gz.tbi.dvc | 110.0 B | f8f7b0fe36bcb322d1492d8fa8fdb0f2 |
| genomic_resource.yaml | 4.93 KB | 7670c554c2f878fc6065979b25dad425 |
| genomic_resource_original.yaml | 4.84 KB | 94daeb7a6b901a58cb718d7f511ec1a9 |
| statistics/ |