TF_ChIP-seq_ENCSR314BBS
TF_ChIP-seq ENCSR314BBS [biosample_summary="Homo sapiens K562 stably expressing PTTG1" and target="PTTG1"]
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| Id: | TF_ChIP-seq/ENCSR314BBS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR314BBS [biosamplesummary="Homo sapiens K562 stably expressing PTTG1" and target="PTTG1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged PTTG1 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN399DGR|/analyses/ENCAN399DGR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF860REV|/files/ENCFF860REV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18109082 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PTTG1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF860REV|/files/ENCFF860REV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF860REV|/files/ENCFF860REV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR314BBS | float |
TF_ChIP-seq_ENCSR314BBS |
TF_ChIP-seq ENCSR314BBS [biosample_summary="Homo sapiens K562 stably expressing PTTG1" and target="PTTG1"]
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[30, 2.61e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF332DRG.bed.gz | 84.54 KB | 1e20dd325116baacb561791a59333622 |
| ENCFF332DRG.bed.gz.dvc | 99.0 B | 974cb698658e807e49d1a5677b14f3f8 |
| ENCFF332DRG.tabix.bed.gz | 67.37 KB | fc913a782e8005433526d3b2bf19e616 |
| ENCFF332DRG.tabix.bed.gz.dvc | 105.0 B | b14a1f47b3aaa6fdb7a335baa2885695 |
| ENCFF332DRG.tabix.bed.gz.tbi | 45.73 KB | db27527c7136d0502fb667f95f5b5427 |
| ENCFF332DRG.tabix.bed.gz.tbi.dvc | 109.0 B | 393a96584f417f29edb8b5200f460966 |
| genomic_resource.yaml | 3.22 KB | 87fa41e1a986d10212903a671d95272c |
| genomic_resource_original.yaml | 3.1 KB | 85daae0f39e8cac752d64f2aff0daa50 |
| statistics/ |