TF_ChIP-seq_ENCSR308LFD
TF_ChIP-seq ENCSR308LFD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRY" and target="SRY"]
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| Id: | TF_ChIP-seq/ENCSR308LFD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR308LFD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRY" and target="SRY"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SRY output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN247EOR|/analyses/ENCAN247EOR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF689EHG|/files/ENCFF689EHG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF689EHG|/files/ENCFF689EHG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF380QRQ|/files/ENCFF380QRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF380QRQ|/files/ENCFF380QRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR308LFD | float |
TF_ChIP-seq_ENCSR308LFD |
TF_ChIP-seq ENCSR308LFD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRY" and target="SRY"]
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[10.4, 563] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF862WTX.bed.gz | 282.16 KB | 55488c8e7f4da0f19fe7d0a15c33100c |
| ENCFF862WTX.bed.gz.dvc | 100.0 B | d1692d6f131188b1f54fe6afe66a91d3 |
| ENCFF862WTX.tabix.bed.gz | 230.81 KB | d369a875a782ba02eacc98ad9706e147 |
| ENCFF862WTX.tabix.bed.gz.dvc | 106.0 B | 0ec170e774fc173411ad88650059a6ec |
| ENCFF862WTX.tabix.bed.gz.tbi | 92.63 KB | 6562cbfdc413d8ae9e9dacc13c6e1d65 |
| ENCFF862WTX.tabix.bed.gz.tbi.dvc | 109.0 B | aaab17550fbd68cef9c58e587d3579d5 |
| genomic_resource.yaml | 4.21 KB | daac725bf0aafc7ef4688a2d551c6fcc |
| genomic_resource_original.yaml | 4.06 KB | 7d6a2c00fd7af06e97d505fce7f7a85f |
| statistics/ |