TF_ChIP-seq_ENCSR307YJU
TF_ChIP-seq ENCSR307YJU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"]
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| Id: | TF_ChIP-seq/ENCSR307YJU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR307YJU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MYNN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN651POX|/analyses/ENCAN651POX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF975SSN|/files/ENCFF975SSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF975SSN|/files/ENCFF975SSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF853SFF|/files/ENCFF853SFF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF853SFF|/files/ENCFF853SFF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF603EAX|/files/ENCFF603EAX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.56 and a self consistency ratio of 3.26. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR307YJU | float |
TF_ChIP-seq_ENCSR307YJU |
TF_ChIP-seq ENCSR307YJU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"]
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[14.5, 531] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF603EAX.bed.gz | 18.57 KB | 72a9556858ec9b98aee3a7f32b3f240f |
| ENCFF603EAX.bed.gz.dvc | 99.0 B | 3f355412d95eef1349ab414192255b21 |
| ENCFF603EAX.tabix.bed.gz | 11.49 KB | b56f9505ddcc6be878d1772fcf5b3b50 |
| ENCFF603EAX.tabix.bed.gz.dvc | 105.0 B | 0c5d0bb2fb1cab985933c8d6852e9ee6 |
| ENCFF603EAX.tabix.bed.gz.tbi | 13.24 KB | 298db285875d421f95d06b539f506e59 |
| ENCFF603EAX.tabix.bed.gz.tbi.dvc | 109.0 B | 9ef0ff27a22719eb04b1830a6ffc890e |
| genomic_resource.yaml | 4.74 KB | 88fbbf90630db1fc9269fb9545b7b9fe |
| genomic_resource_original.yaml | 4.58 KB | c1134c36a5d21698805b6a0037e0c8a1 |
| statistics/ |