TF_ChIP-seq_ENCSR306HAG
TF_ChIP-seq ENCSR306HAG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4" and target="SNAPC4"]
×
| Id: | TF_ChIP-seq/ENCSR306HAG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR306HAG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4" and target="SNAPC4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN087ACI|/analyses/ENCAN087ACI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN087ACI|/analyses/ENCAN087ACI/} has in progress subobject document {9324678b-1b68-457b-a06d-aa98f933f744|/documents/9324678b-1b68-457b-a06d-aa98f933f744/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF827NQM|/files/ENCFF827NQM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF827NQM|/files/ENCFF827NQM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.38. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF225ULQ|/files/ENCFF225ULQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF225ULQ|/files/ENCFF225ULQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR306HAG | float |
TF_ChIP-seq_ENCSR306HAG |
TF_ChIP-seq ENCSR306HAG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4" and target="SNAPC4"]
|
|
[10.2, 1.23e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF754CRG.bed.gz | 222.15 KB | f6e9de1e8ace5cdfe45809c0c984b93c |
| ENCFF754CRG.bed.gz.dvc | 100.0 B | 540577da6e56fe4c02423aa171680a3d |
| ENCFF754CRG.tabix.bed.gz | 174.63 KB | a744f907130bcd30c4162e43a6d29533 |
| ENCFF754CRG.tabix.bed.gz.dvc | 106.0 B | 3b2fc36354298b8aea2bec7258b711d8 |
| ENCFF754CRG.tabix.bed.gz.tbi | 72.22 KB | 8f67e90e8b9c53884f769b4557d6b5ca |
| ENCFF754CRG.tabix.bed.gz.tbi.dvc | 109.0 B | 5764a214f76706728de5f9eb08347084 |
| genomic_resource.yaml | 4.45 KB | b97f5fd303daca087bb51584f4a2ec7b |
| genomic_resource_original.yaml | 4.29 KB | 39d235c648a5aafaca91a9c532d5130a |
| statistics/ |