TF_ChIP-seq_ENCSR303GFI
TF_ChIP-seq ENCSR303GFI [biosample_summary="Homo sapiens RWPE1" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR303GFI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR303GFI [biosamplesummary="Homo sapiens RWPE1" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN655WLI|/analyses/ENCAN655WLI/} has in progress subobject document {11560a4e-f28d-4d3a-a24e-d186953d5091|/documents/11560a4e-f28d-4d3a-a24e-d186953d5091/} audit_internal_action: Released analysis {ENCAN655WLI|/analyses/ENCAN655WLI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF414OKJ|/files/ENCFF414OKJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19838048 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF003YYZ|/files/ENCFF003YYZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF003YYZ|/files/ENCFF003YYZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.45. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR303GFI | float |
TF_ChIP-seq_ENCSR303GFI |
TF_ChIP-seq ENCSR303GFI [biosample_summary="Homo sapiens RWPE1" and target="CTCF"]
|
|
[22.3, 2.47e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF116FQB.bed.gz | 915.92 KB | b51f0378444df14af2b168f87da3dd93 |
| ENCFF116FQB.bed.gz.dvc | 100.0 B | 570b8238924daf5502777bc53626d598 |
| ENCFF116FQB.tabix.bed.gz | 602.59 KB | 88ec1189f51b817fea2b121287f37f92 |
| ENCFF116FQB.tabix.bed.gz.dvc | 106.0 B | 0c27c775e6aaccd9f8c95fcf08a14021 |
| ENCFF116FQB.tabix.bed.gz.tbi | 232.01 KB | bbdac3f371253756ddecfe03ce3ecfaf |
| ENCFF116FQB.tabix.bed.gz.tbi.dvc | 110.0 B | d2b39798be2355c08db4a920bd0609d5 |
| genomic_resource.yaml | 3.39 KB | 6a30ae03b972a3f8f7c4cbb7301aab58 |
| genomic_resource_original.yaml | 3.29 KB | 9452904fd80f0a0976bfbc0cc6bdae86 |
| statistics/ |