TF_ChIP-seq_ENCSR296JFK
TF_ChIP-seq ENCSR296JFK [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR296JFK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR296JFK [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN704ATQ|/analyses/ENCAN704ATQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF135DSN|/files/ENCFF135DSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF135DSN|/files/ENCFF135DSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR296JFK | float |
TF_ChIP-seq_ENCSR296JFK |
TF_ChIP-seq ENCSR296JFK [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="CTCF"]
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[4.58, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF904UWV.bed.gz | 860.15 KB | b466687e6cd1db44cbc10d3df4013a37 |
| ENCFF904UWV.bed.gz.dvc | 100.0 B | c722a39abb00267347ea25403c36f5dc |
| ENCFF904UWV.tabix.bed.gz | 593.05 KB | 9d43ce07c280e2275b65a331a54577b9 |
| ENCFF904UWV.tabix.bed.gz.dvc | 106.0 B | f5e280de8365052edd1f563804c35338 |
| ENCFF904UWV.tabix.bed.gz.tbi | 290.41 KB | 6657fceb279a3dfdb437723ec6e74ceb |
| ENCFF904UWV.tabix.bed.gz.tbi.dvc | 110.0 B | 7af41c28562eedc029b526299db7e6fd |
| genomic_resource.yaml | 2.76 KB | df9e003bd751dddfb882ffbb58946a8b |
| genomic_resource_original.yaml | 2.62 KB | 591a6b02792490cc81be95f32e10feba |
| statistics/ |