| Id: | TF_ChIP-seq/ENCSR294SAK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR294SAK [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXC10" and target="HOXC10"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HOXC10 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN786CPQ|/analyses/ENCAN786CPQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF062AUB|/files/ENCFF062AUB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF062AUB|/files/ENCFF062AUB/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF259RNX|/files/ENCFF259RNX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF259RNX|/files/ENCFF259RNX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR294SAK | float |
TF_ChIP-seq_ENCSR294SAK |
TF_ChIP-seq ENCSR294SAK [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXC10" and target="HOXC10"]
|
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[7.88, 537] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF722GPK.bed.gz | 49.62 KB | b86d2bd2bc6ea3499c671275984fffca |
| ENCFF722GPK.bed.gz.dvc | 99.0 B | db29e8373d17bfb44a1f959aacdf8a6e |
| ENCFF722GPK.tabix.bed.gz | 36.48 KB | a372ef11698cdd376248d875a988ab7a |
| ENCFF722GPK.tabix.bed.gz.dvc | 105.0 B | 2a927e71b7761ea4ae5ea8ac17e2a52b |
| ENCFF722GPK.tabix.bed.gz.tbi | 25.3 KB | 24cab7d7130c1d302078b2312469e6d2 |
| ENCFF722GPK.tabix.bed.gz.tbi.dvc | 109.0 B | e04e596620c841b3f00b5719ed03d9de |
| genomic_resource.yaml | 4.24 KB | 40ea4ba3dfdc1e9c22226d3d5b2ec964 |
| genomic_resource_original.yaml | 4.08 KB | 8d4cfa0f0ca41c0306160118f62d14a2 |
| statistics/ |