| Id: | TF_ChIP-seq/ENCSR290SSQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR290SSQ [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF373VEK|/files/ENCFF373VEK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN450WJT|/analyses/ENCAN450WJT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF663TTK|/files/ENCFF663TTK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13862913 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAZ-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF373VEK|/files/ENCFF373VEK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.22. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF040YND|/files/ENCFF040YND/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.22. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR290SSQ | float |
TF_ChIP-seq_ENCSR290SSQ |
TF_ChIP-seq ENCSR290SSQ [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ" and target="MAZ"]
|
 |
[10.8, 1.8e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF373VEK.bed.gz | 686.94 KB | 36f73bf4513ac631229e5e33f26982a2 |
| ENCFF373VEK.bed.gz.dvc | 100.0 B | 923a74e96801aae84267031b3820486d |
| ENCFF373VEK.tabix.bed.gz | 486.2 KB | b29f5d1db3343c1c93af9b704b53c8fc |
| ENCFF373VEK.tabix.bed.gz.dvc | 106.0 B | 91c2e95684b56b046629326d301b1d83 |
| ENCFF373VEK.tabix.bed.gz.tbi | 167.65 KB | e0293e6b3fc7967df89aa71ce18ec3ed |
| ENCFF373VEK.tabix.bed.gz.tbi.dvc | 110.0 B | 32d2415207c1bf93b3dd4a573ca80ca4 |
| genomic_resource.yaml | 3.48 KB | 738295eba48ec705eddda8885c145550 |
| genomic_resource_original.yaml | 3.31 KB | a39d37a6b155e0927443d2c0dc9fc5de |
| statistics/ |