| Id: | TF_ChIP-seq/ENCSR289NSN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR289NSN [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF354C" and target="ZNF354C"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF354C output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN004GRC|/analyses/ENCAN004GRC/} has in progress subobject document {2fc04877-a1f0-403a-ae1a-936258da5b9c|/documents/2fc04877-a1f0-403a-ae1a-936258da5b9c/} audit_internal_action: Released analysis {ENCAN004GRC|/analyses/ENCAN004GRC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF784GMT|/files/ENCFF784GMT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 16795861 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF354C-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF921ABU|/files/ENCFF921ABU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 2.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF566BZR|/files/ENCFF566BZR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 2.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR289NSN | float |
TF_ChIP-seq_ENCSR289NSN |
TF_ChIP-seq ENCSR289NSN [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF354C" and target="ZNF354C"]
|
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[8.8, 133] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF921ABU.bed.gz | 29.03 KB | 00f63b7cbe0d583e552fdd8defa2a600 |
| ENCFF921ABU.bed.gz.dvc | 99.0 B | a4784b808a15b56f6cb68c40f1e45825 |
| ENCFF921ABU.tabix.bed.gz | 18.67 KB | 6ce27149b7501e14730229869a9ca70a |
| ENCFF921ABU.tabix.bed.gz.dvc | 105.0 B | 2310c1c7a1e154bd818fd2271dbf698a |
| ENCFF921ABU.tabix.bed.gz.tbi | 19.89 KB | 7c5c52b84d15348b323ac9303f401353 |
| ENCFF921ABU.tabix.bed.gz.tbi.dvc | 109.0 B | 8132cfb7289f6b518cd25ac7b37d2590 |
| genomic_resource.yaml | 3.56 KB | 01ebd8f9e52b74286e613884ed18ff13 |
| genomic_resource_original.yaml | 3.38 KB | 4d21050e30a6ea07a730be54c13a5d81 |
| statistics/ |