TF_ChIP-seq_ENCSR288ZFV
TF_ChIP-seq ENCSR288ZFV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF4" and target="ATF4"]
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| Id: | TF_ChIP-seq/ENCSR288ZFV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR288ZFV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF4" and target="ATF4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN483FNO|/analyses/ENCAN483FNO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN483FNO|/analyses/ENCAN483FNO/} has in progress subobject document {7ef33ffd-d30f-4d29-83df-9191f5542f9d|/documents/7ef33ffd-d30f-4d29-83df-9191f5542f9d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF144BLI|/files/ENCFF144BLI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF144BLI|/files/ENCFF144BLI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.88. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF636BGI|/files/ENCFF636BGI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF636BGI|/files/ENCFF636BGI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR288ZFV | float |
TF_ChIP-seq_ENCSR288ZFV |
TF_ChIP-seq ENCSR288ZFV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF4" and target="ATF4"]
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[15.3, 592] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266GBP.bed.gz | 23.88 KB | 05ef06477435e5d15979f6c63ccd03cc |
| ENCFF266GBP.bed.gz.dvc | 99.0 B | 0121a1fd7b623bfbf40392a307e9c348 |
| ENCFF266GBP.tabix.bed.gz | 15.04 KB | 993823598904124ae69bc1298bfed9e4 |
| ENCFF266GBP.tabix.bed.gz.dvc | 105.0 B | 4085bd113a68f1fdf316f4a9f0d16e78 |
| ENCFF266GBP.tabix.bed.gz.tbi | 15.87 KB | d99143913d9032031b004faefd5923c8 |
| ENCFF266GBP.tabix.bed.gz.tbi.dvc | 109.0 B | 51f47263afa6f2b49fef1884cf7815e6 |
| genomic_resource.yaml | 4.43 KB | 3d22bc0759947ddf23feae5049cfff08 |
| genomic_resource_original.yaml | 4.27 KB | 20293eeb7ab71c4132155a5036b76c0d |
| statistics/ |