TF_ChIP-seq_ENCSR288NNJ
TF_ChIP-seq ENCSR288NNJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416" and target="ZNF416"]
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| Id: | TF_ChIP-seq/ENCSR288NNJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR288NNJ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416" and target="ZNF416"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN860WWC|/analyses/ENCAN860WWC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF863FDE|/files/ENCFF863FDE/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF863FDE|/files/ENCFF863FDE/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF587IMV|/files/ENCFF587IMV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF587IMV|/files/ENCFF587IMV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR288NNJ | float |
TF_ChIP-seq_ENCSR288NNJ |
TF_ChIP-seq ENCSR288NNJ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416" and target="ZNF416"]
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[15.4, 1.07e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF717CPE.bed.gz | 85.16 KB | a720ba2cd3a327a9dcd456491e186a27 |
| ENCFF717CPE.bed.gz.dvc | 99.0 B | e0b9b63f9f6108f293a2d2a1cb174bee |
| ENCFF717CPE.tabix.bed.gz | 55.47 KB | 3c72adeb5ee9ce9db292bd469435a573 |
| ENCFF717CPE.tabix.bed.gz.dvc | 105.0 B | e924aeeb489885024772da436fb9eedd |
| ENCFF717CPE.tabix.bed.gz.tbi | 39.65 KB | 7571be3e3a89ca735a8fb286f1233613 |
| ENCFF717CPE.tabix.bed.gz.tbi.dvc | 109.0 B | 71f63e01a66d8f5fe8391a0a36fd85f5 |
| genomic_resource.yaml | 4.24 KB | a5281ecf430512a79dfb7f21309c17db |
| genomic_resource_original.yaml | 4.07 KB | 01c18011bda6d13776529482c8d5a85d |
| statistics/ |