TF_ChIP-seq_ENCSR286LPH
TF_ChIP-seq ENCSR286LPH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615" and target="ZNF615"]
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| Id: | TF_ChIP-seq/ENCSR286LPH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR286LPH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615" and target="ZNF615"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN182IQY|/analyses/ENCAN182IQY/} has in progress subobject document {30de0612-2ba2-4d1a-8671-60cfa2694d8e|/documents/30de0612-2ba2-4d1a-8671-60cfa2694d8e/} audit_internal_action: Released analysis {ENCAN182IQY|/analyses/ENCAN182IQY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF403NCB|/files/ENCFF403NCB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF403NCB|/files/ENCFF403NCB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF905BAN|/files/ENCFF905BAN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF905BAN|/files/ENCFF905BAN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.27. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF618JPG|/files/ENCFF618JPG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.75. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF440YLL|/files/ENCFF440YLL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.75. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR286LPH | float |
TF_ChIP-seq_ENCSR286LPH |
TF_ChIP-seq ENCSR286LPH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615" and target="ZNF615"]
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[11.1, 447] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF618JPG.bed.gz | 121.54 KB | 6d8bbb14f112e2726e26b6782bf09869 |
| ENCFF618JPG.bed.gz.dvc | 100.0 B | 1a1288247e40b1d5b92f61073ccc3099 |
| ENCFF618JPG.tabix.bed.gz | 90.6 KB | 7cd99e856ba1f6c75b30410e8a742fd3 |
| ENCFF618JPG.tabix.bed.gz.dvc | 105.0 B | 013792709e063605b3ea07d986ba2424 |
| ENCFF618JPG.tabix.bed.gz.tbi | 48.14 KB | c91ea19719769b98681427183ac57631 |
| ENCFF618JPG.tabix.bed.gz.tbi.dvc | 109.0 B | 66469b355eb67a17bdfd90e89250c80e |
| genomic_resource.yaml | 5.49 KB | 6e380f2e26581a90955c32cf1140c70c |
| genomic_resource_original.yaml | 5.33 KB | aea6569e985496464cbc7d47fda9b5ec |
| statistics/ |