TF_ChIP-seq_ENCSR285HHZ
TF_ChIP-seq ENCSR285HHZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"]
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| Id: | TF_ChIP-seq/ENCSR285HHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR285HHZ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN993UAF|/analyses/ENCAN993UAF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF790QVT|/files/ENCFF790QVT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF790QVT|/files/ENCFF790QVT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR285HHZ | float |
TF_ChIP-seq_ENCSR285HHZ |
TF_ChIP-seq ENCSR285HHZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"]
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[8.44, 512] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF602FXL.bed.gz | 88.47 KB | 4e145d1ccaef5cb40773ff883a5d9b9b |
| ENCFF602FXL.bed.gz.dvc | 99.0 B | 0181783cec8f5ee3e12860f5b34a486d |
| ENCFF602FXL.tabix.bed.gz | 61.2 KB | c264141edbe4ef2c3c3acd7ed559bfd4 |
| ENCFF602FXL.tabix.bed.gz.dvc | 105.0 B | 91a2751bc3861a3a03246b303b5884d6 |
| ENCFF602FXL.tabix.bed.gz.tbi | 45.95 KB | 050c544bf752a51c58911f462a8beca4 |
| ENCFF602FXL.tabix.bed.gz.tbi.dvc | 109.0 B | 5ae0f3069d8e663647d1ff43e32e81e7 |
| genomic_resource.yaml | 2.96 KB | 241f3c5e87b3a1e6db51865816370255 |
| genomic_resource_original.yaml | 2.8 KB | 449cee6b8ceb8bbe78e00ff9d8abeff9 |
| statistics/ |