| Id: | TF_ChIP-seq/ENCSR283DOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR283DOU [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660" and target="ZNF660"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN221HGZ|/analyses/ENCAN221HGZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF560DUD|/files/ENCFF560DUD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF560DUD|/files/ENCFF560DUD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.34. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR283DOU | float |
TF_ChIP-seq_ENCSR283DOU |
TF_ChIP-seq ENCSR283DOU [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660" and target="ZNF660"]
|
 |
[19.4, 3.65e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF959WAA.bed.gz | 577.11 KB | ce288e8661a0fc19838a310f2b64b35f |
| ENCFF959WAA.bed.gz.dvc | 100.0 B | cf22ecb73b97c9260c16f033c2368480 |
| ENCFF959WAA.tabix.bed.gz | 403.88 KB | f9e46ed91378dd34cdd01caac42666fe |
| ENCFF959WAA.tabix.bed.gz.dvc | 106.0 B | 0614750275379d4ed9769c017810b415 |
| ENCFF959WAA.tabix.bed.gz.tbi | 187.88 KB | 33c85838b21d2eadb9212a12c67ac0b5 |
| ENCFF959WAA.tabix.bed.gz.tbi.dvc | 110.0 B | 216c53b25c14a5d0e668e76318b97628 |
| genomic_resource.yaml | 3.07 KB | 465e61de21da48df1c323d1163650e6c |
| genomic_resource_original.yaml | 2.88 KB | 7f6321414f14fcb14da35986652164b8 |
| statistics/ |