TF_ChIP-seq_ENCSR281VWZ
TF_ChIP-seq ENCSR281VWZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I" and target="GTF2I"]
×
| Id: | TF_ChIP-seq/ENCSR281VWZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR281VWZ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I" and target="GTF2I"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN142TBN|/analyses/ENCAN142TBN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF394DOL|/files/ENCFF394DOL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF394DOL|/files/ENCFF394DOL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF398NBJ|/files/ENCFF398NBJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF398NBJ|/files/ENCFF398NBJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.93. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR281VWZ | float |
TF_ChIP-seq_ENCSR281VWZ |
TF_ChIP-seq ENCSR281VWZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I" and target="GTF2I"]
|
|
[15.5, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF848ADM.bed.gz | 139.39 KB | a1e9666b3251f3f9bcf79fa04467992c |
| ENCFF848ADM.bed.gz.dvc | 100.0 B | e0bb81b154e0284362a8a3406c8b160c |
| ENCFF848ADM.tabix.bed.gz | 92.17 KB | 76299390993fadd80236dae01ac38327 |
| ENCFF848ADM.tabix.bed.gz.dvc | 105.0 B | a0a0f426813d138b44f1905a7d00cca1 |
| ENCFF848ADM.tabix.bed.gz.tbi | 65.71 KB | 439735fbee0f5f37c59b84cb7f914db6 |
| ENCFF848ADM.tabix.bed.gz.tbi.dvc | 109.0 B | 00f63786878d729a9a524996407d9942 |
| genomic_resource.yaml | 4.24 KB | 28d24db2d6bdc7320518da0d84bcd0f0 |
| genomic_resource_original.yaml | 4.08 KB | 97ed09b1e2654d97216225600964389e |
| statistics/ |